Package: nmfkc 0.8.2
nmfkc: Non-Negative Matrix Factorization with Kernel Covariates
Performs Non-negative Matrix Factorization (NMF) with Kernel Covariates. Given an observation matrix and kernel covariates, it optimizes both a basis matrix and a parameter matrix. Notably, if the kernel matrix is an identity matrix, the method simplifies to standard NMF. Also provides NMF with Random Effects (NMF-RE) via nmfre(), which estimates a mixed-effects model combining covariate-driven scores with unit-specific random effects together with wild bootstrap inference, and NMF-based Structural Equation Modeling (NMF-SEM) via nmf.sem(), which fits a two-block input-output model for blind source separation and path analysis. References: Satoh (2025) <doi:10.48550/arXiv.2403.05359>; Satoh (2025) <doi:10.48550/arXiv.2510.10375>; Satoh (2025) <doi:10.48550/arXiv.2512.18250>; Satoh (2026) <doi:10.48550/arXiv.2603.01468>; Satoh (2026) <doi:10.1007/s42081-025-00314-0>.
Authors:
nmfkc_0.8.2.tar.gz
nmfkc_0.8.2.zip(r-4.7)nmfkc_0.8.2.zip(r-4.6)nmfkc_0.8.2.zip(r-4.5)
nmfkc_0.8.2.tgz(r-4.6-any)nmfkc_0.8.2.tgz(r-4.5-any)
nmfkc_0.8.2.tar.gz(r-4.7-any)nmfkc_0.8.2.tar.gz(r-4.6-any)
nmfkc_0.8.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
nmfkc/json (API)
NEWS
| # Install 'nmfkc' in R: |
| install.packages('nmfkc', repos = c('https://ksatohds.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ksatohds/nmfkc/issues
Pkgdown/docs site:https://ksatohds.github.io
Last updated from:f8de7ccad7. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 169 | ||
| source / vignettes | OK | 291 | ||
| linux-release-x86_64 | OK | 180 | ||
| macos-release-arm64 | OK | 164 | ||
| macos-oldrel-arm64 | OK | 112 | ||
| windows-devel | OK | 117 | ||
| windows-release | OK | 131 | ||
| windows-oldrel | OK | 133 | ||
| wasm-release | OK | 114 |
Exports:nmf.cluster.criterianmf.cluster.flownmf.ffbnmf.ffb.cvnmf.ffb.DOTnmf.ffb.inferencenmf.ffb.splitnmf.semnmf.sem.cvnmf.sem.DOTnmf.sem.inferencenmf.sem.splitnmfaenmfae.cvnmfae.DOTnmfae.ecvnmfae.heatmapnmfae.inferencenmfae.kernel.beta.cvnmfae.ranknmfae.renamenmfae.signednmfae.signed.ecvnmfae.signed.heatmapnmfae.signed.inferencenmfae.signed.ranknmfae.signed.renamenmfkcnmfkc.arnmfkc.ar.degree.cvnmfkc.ar.DOTnmfkc.ar.predictnmfkc.ar.stationaritynmfkc.ardnmfkc.bicvnmfkc.classnmfkc.consensusnmfkc.criterionnmfkc.cvnmfkc.denormalizenmfkc.DOTnmfkc.ecvnmfkc.inferencenmfkc.kernelnmfkc.kernel.beta.cvnmfkc.kernel.beta.nearest.mednmfkc.kernel.gaussiannmfkc.netnmfkc.net.DOTnmfkc.net.ecvnmfkc.net.inferencenmfkc.net.ranknmfkc.normalizenmfkc.ranknmfkc.residual.plotnmfkc.signednmfkc.signed.cvnmfkc.signed.ecvnmfkc.signed.ranknmfkc.signed.rffnmfrenmfre.dfU.scannmfre.inference
Dependencies:
Choosing the NMF rank on data with a known true rank
Rendered fromrank-selection-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-06-14
Started: 2026-06-14
Classification with NMF-LAB
Rendered fromclassification-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-03-29
Started: 2025-10-13
Introduction to nmfkc
Rendered fromintroduction-to-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2025-11-24
Started: 2025-10-13
NMF-FFB with nmfkc
Rendered fromnmf-sem-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-05-03
Started: 2025-12-20
NMF-RE: Mixed-Effects Modeling with nmfkc
Rendered fromnmf-re-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-03-29
Started: 2026-03-02
Soft community detection in networks with nmfkc.net
Rendered fromnetwork-community-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-06-14
Started: 2026-06-14
Time Series Analysis with NMF-VAR
Rendered fromtimeseries-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-03-29
Started: 2025-10-13
Topic Modeling with nmfkc
Rendered fromtopic-modeling-with-nmfkc.Rmdusingknitr::rmarkdownon Jun 14 2026.Last update: 2026-06-14
Started: 2025-10-13
